From ebe242230ebc80d6b3d90613f1dacd5d61c260f0 Mon Sep 17 00:00:00 2001
From: Blaise Thompson <blaise@untzag.com>
Date: Sat, 21 Apr 2018 22:05:11 -0500
Subject: 2018-04-21 22:05

---
 presentation.tex | 144 +++++++++++++++++++++++++++++++++----------------------
 1 file changed, 86 insertions(+), 58 deletions(-)

(limited to 'presentation.tex')

diff --git a/presentation.tex b/presentation.tex
index 47ae640..874fdea 100644
--- a/presentation.tex
+++ b/presentation.tex
@@ -1,6 +1,6 @@
 \documentclass{presentation}
 
-\title{Development of \\ Frequency Domain Multidimensional Spectroscopy}
+\title{Development of \\ Frequency-Domain Multidimensional Spectroscopy}
 \subtitle{---Beyond Two Dimensions---}
 \author{Blaise Thompson}
 
@@ -10,22 +10,27 @@
 \begin{document}
 \maketitle
 
-\begin{frame}{Brown et al. (1999)}
+\begin{frame}{Introduction to CMDS}
   \begin{columns}
-    \begin{column}{0.5\textwidth}
-      \fbox{\adjincludegraphics[width=\textwidth]{"literature/BrownEmilyJ1999a"}}
+    \begin{column}{0.6\textwidth}
+      \includegraphics[width=\textwidth]{presentation/SK_PhDThesis_fsTable-Overview}
     \end{column}
-    \begin{column}{0.5\textwidth}
+    \begin{column}{0.4\textwidth}
       \includegraphics[width=\textwidth]{"literature/BrownEmilyJ1999a_1"}
       \centering
       \\
       \vspace{2\baselineskip}
       $\vec{k_{\text{sig}}} = \vec{k_a} - \vec{k_b} + \vec{k_c}$
+      \vspace{2\baselineskip} \\
+      \tiny \raggedright
+      Figure: \\
+      Brown, E., Zhang, Q. and Dantus, M. (1999). \\
+      The Journal of Chemical Physics, 110(12), pp.5772-5788.
     \end{column}
   \end{columns}
 \end{frame}
 
-\begin{frame}{Overview}
+\begin{frame}{Introduction to CMDS}
   \adjincludegraphics[width=\textwidth]{"mixed_domain/simulation overview"}
 \end{frame}
 
@@ -88,15 +93,28 @@
   \end{columns}
 \end{frame}
 
-\begin{frame}{Postage stamp}
-  [FIGURE FROM LIT]
-\end{frame}
-
-\begin{frame}{Czech}
-  [FIGURE FROM CZECH]
+\begin{frame}{Two strategies for CMDS}
+  \begin{columns}
+    \begin{column}{0.5\textwidth}
+      Time Domain
+      \includegraphics[width=\textwidth]{"literature/SinghAkshay2014a_2"}
+      \tiny
+      Figure: \\
+      Singh, A., Moody, G., Wu, S., Wu, Y., Ghimire, N., Yan, J., Mandrus, D., Xu, X. and Li, X.
+      (2014).
+      Coherent Electronic Coupling in Atomically Thin MoSe$_2$. Physical Review Letters, 112(21).
+    \end{column}
+    \begin{column}{0.5\textwidth}
+      Frequency Domain
+      \adjincludegraphics[width=\textwidth]{presentation/singh_czech}
+      More \hl{bandwidth}.
+      Crucial for electronic states, band structure.
+    \end{column}
+  \end{columns}
 \end{frame}
 
 \begin{frame}{Bandwidth}
+  A lot more bandwidth... through the usage of OPAs
   \adjincludegraphics[width=\textwidth]{opa/OPA_ranges}
 \end{frame}
 
@@ -105,24 +123,6 @@
   Two ``stages'', each with two motorized optics.
 \end{frame}
 
-\begin{frame}{Tuning}
-  % TODO: curve plot?
-  Tuning curves---recorded correspondence between motor positions and output color.
-  \vspace{\baselineskip} \\
-  Exquisite sensitivity to alignment and lab conditions---tuning required roughly once a week.
-  \vspace{\baselineskip} \\
-  Manual tuning is difficult...
-  \begin{itemize}
-    \item high dimensional motor space
-    \item difficult to asses overall quality
-    \item several hours of work per OPA (sometimes, an entire day for one OPA)
-  \end{itemize}
-\end{frame}
-
-\begin{frame}{Preamp}
-  \includegraphics[width=\textwidth]{opa/preamp}
-\end{frame}
-
 \begin{frame}{Automation}
   \begin{columns}
     \begin{column}{0.5\textwidth}
@@ -178,24 +178,33 @@
   \end{itemize}
 \end{frame}
 
-\begin{frame}{Extensibility}
-\end{frame}
-  
-\subsection{Hardware}  % --------------------------------------------------------------------------
-
-\begin{frame}{Modular Hardware Model}
-  [DARIEN ADDED AEROTECH IN ONE DAY]
-  [I ADDED NEW OPA IN TWO DAYS]
-\end{frame}
-
-\subsection{Acquisitions}  % ----------------------------------------------------------------------
+\subsection{Extensibility}  % ---------------------------------------------------------------------
 
-\begin{frame}{Acquisition Modules}
-  [SUNDEN ADDED POYNTING TUNE IN SEVERAL DAYS]
+\begin{frame}{Extensibility}
+  \begin{columns}
+    \begin{column}{0.25\textwidth}
+      \adjincludegraphics[width=\textwidth]{presentation/hardware}
+    \end{column}
+    \begin{column}{0.75\textwidth}
+      A modular hardware system that can be easily added to
+      \begin{itemize}
+        \item When a new OPA was installed on the picosecond system, PyCMDS was back in action the
+          next day.
+        \item Darien inherited a new delay stage from the Crim Group, and added it to PyCMDS in
+          less than two days.
+        \item New \emph{kinds} of hardware also possible to add, although this is more difficult.
+      \end{itemize}
+      just need to copy a script and modify...
+      % PoyntinTune
+      \vfill
+    \end{column}
+  \end{columns}
 \end{frame}
-  
+ 
 \subsection{Queue}  % -----------------------------------------------------------------------------
 
+% TODO: consider cropping, making into one slide
+
 \begin{frame}{Queue}
   \adjincludegraphics[width=\textwidth]{acquisition/screenshots/004}
 \end{frame}
@@ -243,6 +252,19 @@
   % mention: including expressions
 \end{frame}
 
+\begin{frame}{Universal format}
+  WrightTools defines a \emph{universal file format} for CMDS.
+  \begin{itemize}
+    \item store multiple multidimensional arrays
+    \item metadata
+  \end{itemize}
+  Import data from a variety of sources.
+  \begin{itemize}
+    \item previous Wright Group acquisition software
+    \item commercial instruments (JASCO, Shimadzu, Ocean Optics)
+  \end{itemize}
+\end{frame}
+
 \section{Conclusion}  % ===========================================================================
 
 \begin{frame}{Conclusion}
@@ -255,6 +277,7 @@
       Wright Group
       \begin{itemize}
         \item Kyle Sunden
+        \item Natalia Spitha
         \item Darien Morrow
         \item Jonathan Handali
         \item Nathan Neff-Mallon
@@ -290,7 +313,25 @@
 \end{frame}
   
 \section{Supplement}  % ===========================================================================
- 
+
+\begin{frame}{Tuning}
+  % TODO: curve plot?
+  Tuning curves---recorded correspondence between motor positions and output color.
+  \vspace{\baselineskip} \\
+  Exquisite sensitivity to alignment and lab conditions---tuning required roughly once a week.
+  \vspace{\baselineskip} \\
+  Manual tuning is difficult...
+  \begin{itemize}
+    \item high dimensional motor space
+    \item difficult to asses overall quality
+    \item several hours of work per OPA (sometimes, an entire day for one OPA)
+  \end{itemize}
+\end{frame}
+
+\begin{frame}{Preamp}
+  \includegraphics[width=\textwidth]{opa/preamp}
+\end{frame}
+
 \begin{frame}{Modular hardware model}
   \adjincludegraphics[scale=0.25]{acquisition/hardware_inheritance}
 \end{frame}
@@ -303,19 +344,6 @@
   Sensors with size contribute new variables (dimensions).
 \end{frame}
 
-\begin{frame}{Universal format}
-  WrightTools defines a \emph{universal file format} for CMDS.
-  \begin{itemize}
-    \item store multiple multidimensional arrays
-    \item metadata
-  \end{itemize}
-  Import data from a variety of sources.
-  \begin{itemize}
-    \item previous Wright Group acquisition software
-    \item commercial instruments (JASCO, Shimadzu, Ocean Optics)
-  \end{itemize}
-\end{frame}
-
 \begin{frame}{Domains of CMDS}
   CMDS can be collected in two domains:
   \begin{itemize}
-- 
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